Meant to post this work around a while ago but kept forgetting until I saw a post on it on reddit.

Stolen from /u/ Kaputsnotme on reddit

If your BOFFs are missing on Kobali or Dyson ground, there are two ways to get them back:

Method 1:
1.Click the question mark at the bottom right of your mini-map
2. Click "Get GM help"
3. Click "Stuck"
4. Click "Bridge officers stuck or missing"
5. Click "Request reinforcements" ( you may have to click twice to get both BOFFs )

Method 2:
In your chat box, type "/fillpetteamlist" ( no quote marks ) and press the enter key. Your BOFFs should appear.